Difference between revisions of "Self replication"

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'''Self replication''' is of interest for attempts to attain atomically precise manufacturing ([[Main Page|APM]]) because it the only method that allows for massively parallel assembly. Except one counts exponential assembly (and consequently all similar forms) as as non self replicative (see further down).
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Compact self replication from atoms in not a necessary requirement for the bootstrapping of advanced productive nanosystems.
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== Weak self replication ==
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'''A possible definition of self replication in a very broad and weak sense:'''<br>
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The assembly of assemblers that assemble identically copied assemblers out of a set of base parts (sometimes called vitamins) that is equal or greater in number than two.
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This definition is so weak that even a simple pair of pliers that can be used to put together another one out of two parts could be considered self replicating.
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Since '''replicator mobility''' is not a requirement here [[exponential assembly]] falls under self replication in this broad sense.
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== Strong self replication ==
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'''A possible definition of self replication in a very narrow and strong sense:'''<br>
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Self replication needs to fulfill all the five requirements of the [[replication pentagon]]
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If the assembled product assemblers are not identical but rather randomly or autonomously mutated then using the term "reproduction" is more suitable and the [[replication pentagon]] extends to the [[reproduction hexagon]]
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Strong self replication (actually self reproduction) can be dispersed over a wide system like e.g. human industry as a whole.
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One can distinguish between:
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* compact self replication
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* dispersed self replication
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== Why compact self replication is not reqired ==
  
 
Putting together an macroscopic object (consisting out of some 10<sup>23</sup> atoms) almost atom by atom is a goal of [[atomic precision|AP]] Technology.
 
Putting together an macroscopic object (consisting out of some 10<sup>23</sup> atoms) almost atom by atom is a goal of [[atomic precision|AP]] Technology.
 
It would take unfathomable amounts of time if it where done with only one robotic device. Massively parallel assembly is thus a necessity.
 
It would take unfathomable amounts of time if it where done with only one robotic device. Massively parallel assembly is thus a necessity.
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An early idea to solve this problem was an analog to biological cell growth.
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This idea naturally suggested itself so it was bound to emerge.
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This way self replication came into the focus as a possible pathway towards advanced atomically precise manufacturing
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early on.
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It turned out that strong and compact self replication (the [[direct path]] toward gem-gum-tec)
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is very hard to reach, would lead to inefficient systems and is undesirable.
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Undesirable not because fear of bad image but because when the [[grey goo|eligible but overblown fears]]
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(spawned from the fact that biology does strong '''and compact''' self replication seen in bacteria and viruses) are toned down to real levels there is still some worrisome material left.
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Strong self replication with mutation in fact is an unconditional requirement for technological progress (tools making better tools) but it can be highly dispersed in subsystems.
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So the problem can be split up into top-down methods bottom-up methods and possibly [[exponential assembly]] wedged in between. All of these individually are not compact self replicative. But all of them are part of the
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current human macroscale technology base which is self replicative (and self reproductive).
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(the [[incremental path]] toward gem-gum-tec)
  
 
See here for an overview over all available methods for bootstrapping massively parallel productive nanosystems: [[bootstrapping productive nanosystems]]
 
See here for an overview over all available methods for bootstrapping massively parallel productive nanosystems: [[bootstrapping productive nanosystems]]
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The following start a simple self replication process with only the state of the building block changing:
 
The following start a simple self replication process with only the state of the building block changing:
 
* A tap to a chain or widening cone of standing dominoes
 
* A tap to a chain or widening cone of standing dominoes
* A crystallization core in supercooled water (fire is a bad example it does a lot to its building blocks)
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* A crystallization core in super-cooled water (fire is a bad example it does a lot to its building blocks)
 
* A lifting off bird in a sitting swarm of them (super-exponential propagation)
 
* A lifting off bird in a sitting swarm of them (super-exponential propagation)
  

Revision as of 08:15, 15 June 2017

Compact self replication from atoms in not a necessary requirement for the bootstrapping of advanced productive nanosystems.

Weak self replication

A possible definition of self replication in a very broad and weak sense:
The assembly of assemblers that assemble identically copied assemblers out of a set of base parts (sometimes called vitamins) that is equal or greater in number than two.

This definition is so weak that even a simple pair of pliers that can be used to put together another one out of two parts could be considered self replicating.

Since replicator mobility is not a requirement here exponential assembly falls under self replication in this broad sense.

Strong self replication

A possible definition of self replication in a very narrow and strong sense:
Self replication needs to fulfill all the five requirements of the replication pentagon

If the assembled product assemblers are not identical but rather randomly or autonomously mutated then using the term "reproduction" is more suitable and the replication pentagon extends to the reproduction hexagon

Strong self replication (actually self reproduction) can be dispersed over a wide system like e.g. human industry as a whole.

One can distinguish between:

  • compact self replication
  • dispersed self replication

Why compact self replication is not reqired

Putting together an macroscopic object (consisting out of some 1023 atoms) almost atom by atom is a goal of AP Technology. It would take unfathomable amounts of time if it where done with only one robotic device. Massively parallel assembly is thus a necessity.

An early idea to solve this problem was an analog to biological cell growth. This idea naturally suggested itself so it was bound to emerge. This way self replication came into the focus as a possible pathway towards advanced atomically precise manufacturing early on.

It turned out that strong and compact self replication (the direct path toward gem-gum-tec) is very hard to reach, would lead to inefficient systems and is undesirable. Undesirable not because fear of bad image but because when the eligible but overblown fears (spawned from the fact that biology does strong and compact self replication seen in bacteria and viruses) are toned down to real levels there is still some worrisome material left.

Strong self replication with mutation in fact is an unconditional requirement for technological progress (tools making better tools) but it can be highly dispersed in subsystems.

So the problem can be split up into top-down methods bottom-up methods and possibly exponential assembly wedged in between. All of these individually are not compact self replicative. But all of them are part of the current human macroscale technology base which is self replicative (and self reproductive). (the incremental path toward gem-gum-tec)

See here for an overview over all available methods for bootstrapping massively parallel productive nanosystems: bootstrapping productive nanosystems

General

Self replication can be very simple depending on which building blocks one takes for granted. The following start a simple self replication process with only the state of the building block changing:

  • A tap to a chain or widening cone of standing dominoes
  • A crystallization core in super-cooled water (fire is a bad example it does a lot to its building blocks)
  • A lifting off bird in a sitting swarm of them (super-exponential propagation)

The next more complex step is a composite unit that cause inactive building blocks to form more active composite units. [Todo: Link certain Video]

The human industry as a whole is a so called autogenous system. A set of many specialized assembled parts can collaboratively (and in complex sequence) create an equal set out of a set of base parts (ores). A complete AP small scale factory will be an autogenous system too.

In mold making one could in principal use two two-part-positives which where made from a two-part-negative to create a four-part-negative. This structural replication with parallel common guidance is called exponential assembly.

Classification based on base-structure size

Exponential assembly

First few steps of partial structural replication via so called "exponential assembly". SVG

Exponential assembly is a method of structural copying with exponential speed-up. It is claimed/defined to not be true self replication since the units on their own lack functional completeness and the possible range of structural replication is thus limited to the size of the topmost exponential assembly level.

Alternate term suggestion: partially replicating assembly / partial self replication

Block based self replication

A less top down alternative for exponential assembly would be block based self replication (using e.g. structural DNA nanotechnology). traits:

  • The robotic units consist out of simple basic blocks that can bind together. (complementary shape?)
  • The robotic units as a whole must be complex enough to fulfil their task.
  • A proto-robotic-unit (mechanism/linkage) must be assembled "manually" from the blocks.
  • Steering could be done e.g. by local broadcasting electro-statically from a chips surface.
  • There must be a method to feed the units with new blocks. (bulldozing & shape checking??)

Diamondoid self replication

Nanofactories of technology level III will as a whole be capable of doing diamondoid self replication via mechanosynthetic assembly of moieties as building blocks.

The original idea to make APM a reality was to build a diamondoid nanomachine of technology level III capable of self replication also known as molecular assembler. The attempt to directly build a proto-assembler with just a single AFM/STM microscope forces one to pack the whole replicative functionality into a very small package. This would make the unit inefficient. Furthermore the direct mechanosynthetisation of bigger structures necessary for a proto-assembler turned out to be a too steep slope without stepping stones (at least till the point of this writing 2014). There seem to be much more starting points for incremental technology improvement instead.

The idea of Assemblers blown up by the SciFi writers movies & co raised rather uninformed public concerns about runaway assemblers wreaking havoc. For the science community the "nano" tag meant/means(2014) funding money. But nano came with the meaning of APM embedded which they had nothing to do with. Then APM became linked with the (actually bogus) killer-nano-bugs. It seems some wanted to get rid of that (publicly as direct perceived) association. The prejudice of infeasibility from focused technical expertise may have played a role too. This culminated in the removal of anything APM related from the American national nanotechnology initiative NNI and drastic funding drop for APM development [TODO: check this].
See: history page for more details - Also see: Reproduction hexagon.

General

For the attainment of technology level I either exponential assembly or block based self replication will be needed. Modular molecular composite nanosystems (MMCS) might be employed to organize self assembled structures of the upper size edge. The usage of standard blocks or other prebuilt AP structures for structural replication has the advantages that:

  • the needed accuracy is lower (click to place)
  • contrary to diamond mechanosynthesis no vacuum is needed
  • contrary to molecular moieties prebuild structures can be stuck to a surface by drying and possibly cooling.

The other two methods for massively parallel assembly (or construction) known today are:

  • photo lithography for MEMS (not scalable to arbitrary small size scales; used in exponential assembly)
  • self-assembly (not scalable to arbitrary big size scales; used in block based self replication and possibly in exponential assembly)

For a more broad definition of self replication there is already a lot of literature to consult:
Wikipedia: Self-replicating_machine; The "Bunny Book": Kinematic_Self-Replicating_Machines; In general: Self-replication

Related

External links

  • Demonstration of macroscopic self replication.
    Dr. Gregory Chirikjian presenting Matt Moses work: (video)